Conference Presntations

  1. Physics-based scale- and geometry-consistent coarse-grained potentials,
    A. Liwo, A. K. Sieradzan, E. Lubecka, A. Lipska, Ł. Golon, C. Czaplewski,
    Workshop Multi-scale Modelling, Lorenz Center, Leiden, The Netherlands, June 24-June 28, 2019
    presentation file (PPTX format; 13 MB)

  2. J. A. Liwo, C.R. Czaplewski. Extension of the Force Matching Method to Anisotropic Coarse-Grained Transferable Force Fields: Application to the Unres Model of Proteins. 63rd Annual Meeting of the Biophysical Society, Baltimore, MD, March 02-06, 2019
    Biophys. J., 2019, 116 (3) Suppl. 1, 145A, Meeting Abstract: 719-Pos

  3. E.A. Lubecka. Contact- and Data-assisted Modeling of Protein Structure with the UNRES Force Field, 4th International Conference on Mathematical & Computational Medicine, Riviera Cancun, Mexico, December 3-7, 2018, invited lecture, presenter: E.A. Lubecka

  4. A.S. Karczyńska, C. Czaplewski. Protein-protein docking by simulations with the coarse-grained UNRES force field. 4th International Conference on Mathematical & Computational Medicine, Mexico, December 3-7, 2018, invited talk, presenter: A. Karczyńska.

  5. E.A. Lubecka, A.G. Lipska, A.K. Sieradzan, K. Zięba, A.S. Karczyńska, C. Sikorska, U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń, C. Czaplewski, R. Ślusarz, M. Ślusarz, A. Liwo. Use of improved UNRES force field and replica-exchange molecular dynamics in physics-based template-free and data-assisted prediction of protein structures. Critical Assessment of Techniques for Protein Structure Prediction, Thirteenth meeting Riviera Maya, Mexico, December 1-4, 2018. Book of Abstracts, pp. 183-184. Poster and oral presentation.

  6. E.A. Lubecka, A.G. Lipska, A.K. Sieradzan, A. Liwo, I. Anishchanka, D. Kim, S.N. Crivelli. Prediction of protein structure with the improve UNRES force field aided by contact prediction derived from evolutionarily related proteins. Critical Assessment of Techniques for Protein Structure Prediction, Thirteenth meeting Riviera Maya, Mexico, December 1-4, 2018. Book of Abstracts, pp. 197-198. Poster presentation, presenter: E.A. Lubecka.

  7. A. Liwo, A. K. Sieradzan, E. Lubecka, A. Lipska, Ł. Golon, C. Czaplewski. Physics-based scale- and geometry-consistent coarse-grained potentials. 26th Conference on Current Trends in Computational Chemistry 2018 Jackson, MS, November 9 - November 10, 2018. Invited talk presented by A. Liwo.

  8. E.A. Lubecka, A. Liwo. Replica exchange coarse-grained molecular dynamics simulations of proteins with distance restraints, 4th Polish-Korean Conference on Protein Folding: Theoretical and Experimental Approaches, Iława, Poland, September 9-13, 2018, P17, pp. 46 Poster presentation, presenter: E.A. Lubecka.

  9. P. Krupa, A.S. Karczyńska, A. Liwo, C. Czaplewski. Initial protocol for Protein-protein docking by MREMD simulations with the coarse-grained UNRES force field.Fourth Polish-Korean Conference on “Protein Folding: Theoretical and Experimental Approaches”, Iława, Poland, September 9-13, 2018. Book of Abstracts, pp. 42. Poster presentation, presenter: P. Krupa.

  10. A. Augustynowicz. Some remarks on stability of differential equations on time scales. Emerging Trends in Aplied Mathematics and Mechanics, Kraków, Poland, June 18-22, 2018, oral presentation, presenter: A. Augustynowicz.

  11. A. Liwo, A.K. Sieradzan, E.A. Lubecka, A. Lipska, Ł. Golon, C. Czaplewski. Systematic design of physics-based scale-consistent coarse-grained potentials for the simulations of biomolecules and nanostructures Bio-, chem-, and nanoinformatics approaches to study bionano interface Dublin, Ireland, May 23-25, 2018. Invited talk, presenter: A. Liwo.


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